Information for motif38


Reverse Opposite:

p-value:1e-25
log p-value:-5.771e+01
Information Content per bp:1.530
Number of Target Sequences with motif112.0
Percentage of Target Sequences with motif0.09%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets451.8 +/- 420.3bp
Average Position of motif in Background1062.4 +/- 512.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AGAGGGCTAT---
--AAGGATATNTN

MA0461.1_Atoh1/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGAGGGCTAT
CAGATGGC---

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AGAGGGCTAT
--AGGCCTNG

ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:4
Score:0.55
Offset:2
Orientation:forward strand
Alignment:AGAGGGCTAT
--AGGCCTAG

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---AGAGGGCTAT
AACAGATGGC---

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------AGAGGGCTAT----
GCCASCAGGGGGCGCYVNNG

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:AGAGGGCTAT
----NGCTN-

GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AGAGGGCTAT---
NNAGATNVNWATCTN

MA0467.1_Crx/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-AGAGGGCTAT
AAGAGGATTAG

PB0059.1_Six6_1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AGAGGGCTAT-------
AATAGGGTATCATATAT