Information for motif40


Reverse Opposite:

p-value:1e-17
log p-value:-4.009e+01
Information Content per bp:1.530
Number of Target Sequences with motif108.0
Percentage of Target Sequences with motif0.09%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets431.1 +/- 422.3bp
Average Position of motif in Background874.1 +/- 735.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:1
Score:0.75
Offset:-7
Orientation:forward strand
Alignment:-------GTACTCTGAA
ACTCCAAGTACTTGGAA

PH0116.1_Nkx2-9/Jaspar

Match Rank:2
Score:0.61
Offset:-7
Orientation:reverse strand
Alignment:-------GTACTCTGAA
NATTTAAGTACTTNAAA

MA0114.2_HNF4A/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GTACTCTGAA---
CTGGACTTTGGACTC

HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GTACTCTGAA-----
TGGACTTTGNNCTNTG

PH0117.1_Nkx3-1/Jaspar

Match Rank:5
Score:0.59
Offset:-7
Orientation:reverse strand
Alignment:-------GTACTCTGAA
NATTTAAGTACTTANNA

MA0032.1_FOXC1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GTACTCTGAA
-TACTNNNN-

MA0484.1_HNF4G/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GTACTCTGAA----
TGGACTTTGNNCTCN

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GTACTCTGAA--
GWAAYHTGABMC

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GTACTCTGAA--
TTTCTNAGAAAN

MA0519.1_Stat5a::Stat5b/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GTACTCTGAA--
-TTCTTGGAAAN