Information for motif41


Reverse Opposite:

p-value:1e-15
log p-value:-3.533e+01
Information Content per bp:1.530
Number of Target Sequences with motif242.0
Percentage of Target Sequences with motif0.20%
Number of Background Sequences with motif20.6
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets463.1 +/- 412.6bp
Average Position of motif in Background556.3 +/- 391.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:1
Score:0.74
Offset:0
Orientation:forward strand
Alignment:ACATCGAT--
NTATYGATCH

PH0044.1_Homez/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---ACATCGAT------
AAAACATCGTTTTTAAG

PH0134.1_Pbx1/Jaspar

Match Rank:3
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----ACATCGAT-----
TCACCCATCAATAAACA

PB0144.1_Lef1_2/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ACATCGAT------
GAAGATCAATCACTTA

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-ACATCGAT---
GYCATCMATCAT

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--ACATCGAT------
GAAGATCAATCACTAA

MA0070.1_PBX1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:ACATCGAT----
CCATCAATCAAA

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:ACATCGAT--
TCATCAATCA

PH0158.1_Rhox11_2/Jaspar

Match Rank:9
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------ACATCGAT--
TCNCTTTACAGCGNNNT

PH0157.1_Rhox11_1/Jaspar

Match Rank:10
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------ACATCGAT--
TCNNTTTACAGCGNNNT