Information for motif45


Reverse Opposite:

p-value:1e-12
log p-value:-2.901e+01
Information Content per bp:1.966
Number of Target Sequences with motif3458.0
Percentage of Target Sequences with motif2.89%
Number of Background Sequences with motif445.6
Percentage of Background Sequences with motif2.56%
Average Position of motif in Targets498.6 +/- 444.0bp
Average Position of motif in Background525.1 +/- 439.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GGGCATTT--
GGGAATTTCC

PB0133.1_Hic1_2/Jaspar

Match Rank:2
Score:0.71
Offset:-6
Orientation:reverse strand
Alignment:------GGGCATTT--
NNNNTTGGGCACNNCN

MA0107.1_RELA/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GGGCATTT--
GGGAATTTCC

MF0003.1_REL_class/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GGGCATTT--
GGGGATTTCC

PB0143.1_Klf7_2/Jaspar

Match Rank:5
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----GGGCATTT----
NNNTNGGGCGTATNNTN

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GGGCATTT---
NGGGGATTTCCC

MA0105.3_NFKB1/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GGGCATTT---
GGGAATTTCCC

MA0597.1_THAP1/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GGGCATTT
TNNGGGCAG--

MA0101.1_REL/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GGGCATTT--
GGGGATTTCC

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:10
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GGGCATTT-
-GGCVGTTR