Information for motif50


Reverse Opposite:

p-value:1e-1
log p-value:-4.487e+00
Information Content per bp:1.719
Number of Target Sequences with motif3181.0
Percentage of Target Sequences with motif2.66%
Number of Background Sequences with motif445.3
Percentage of Background Sequences with motif2.55%
Average Position of motif in Targets697.5 +/- 500.6bp
Average Position of motif in Background723.2 +/- 424.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:AGCGCTGG
--NGCTN-

PB0099.1_Zfp691_1/Jaspar

Match Rank:2
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----AGCGCTGG----
CGAACAGTGCTCACTAT

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AGCGCTGG
TTGAGTGSTT-

PB0008.1_E2F2_1/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AGCGCTGG----
ATAAAGGCGCGCGAT

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AGCGCTGG
TTAAGTGCTT-

PB0009.1_E2F3_1/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AGCGCTGG----
ATAAGGGCGCGCGAT

MA0470.1_E2F4/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGCGCTGG----
-GGGCGGGAAGG

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AGCGCTGG
--TGCGTG

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----AGCGCTGG
CTYRAGTGSY--

POL011.1_XCPE1/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGCGCTGG---
-GGGCGGGACC