Information for motif7


Reverse Opposite:

p-value:1e-55
log p-value:-1.278e+02
Information Content per bp:1.530
Number of Target Sequences with motif127.0
Percentage of Target Sequences with motif0.11%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets439.9 +/- 406.8bp
Average Position of motif in Background445.6 +/- 317.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GAGCAACGATGC
CCGCATAGCAACGGA--

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----GAGCAACGATGC
TACCATAGCAACGGT--

PH0044.1_Homez/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GAGCAACGATGC---
NNTAAAAACGATGTTNT

PB0131.1_Gmeb1_2/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GAGCAACGATGC---
TGGGCGACGTCGTTAA

MA0014.2_PAX5/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GAGCAACGATGC-----
GAGGGCAGCCAAGCGTGAC

PB0054.1_Rfx3_1/Jaspar

Match Rank:6
Score:0.54
Offset:-9
Orientation:forward strand
Alignment:---------GAGCAACGATGC--
TGTGACCCTTAGCAACCGATTAA

PB0070.1_Sox30_1/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GAGCAACGATGC----
AATGAACAATGGAATT

MA0087.1_Sox5/Jaspar

Match Rank:8
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GAGCAACGATGC
---NAACAAT--

PB0159.1_Rfx4_2/Jaspar

Match Rank:9
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GAGCAACGATGC--
NNNGTAACTANGNNA

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---GAGCAACGATGC
SCCTAGCAACAG---