Information for motif9


Reverse Opposite:

p-value:1e-45
log p-value:-1.058e+02
Information Content per bp:1.631
Number of Target Sequences with motif148.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets440.7 +/- 436.9bp
Average Position of motif in Background1039.5 +/- 632.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0442.1_SOX10/Jaspar

Match Rank:1
Score:0.74
Offset:4
Orientation:forward strand
Alignment:TCSACTTTGTTG
----CTTTGT--

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-TCSACTTTGTTG----
TNNTCCTTTGTTCTNNT

PB0061.1_Sox11_1/Jaspar

Match Rank:3
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TCSACTTTGTTG----
NNNTCCTTTGTTCTNNN

MA0514.1_Sox3/Jaspar

Match Rank:4
Score:0.70
Offset:3
Orientation:forward strand
Alignment:TCSACTTTGTTG-
---CCTTTGTTTT

MF0011.1_HMG_class/Jaspar

Match Rank:5
Score:0.70
Offset:5
Orientation:forward strand
Alignment:TCSACTTTGTTG
-----ATTGTT-

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.68
Offset:3
Orientation:forward strand
Alignment:TCSACTTTGTTG
---CCWTTGTY-

MA0143.3_Sox2/Jaspar

Match Rank:7
Score:0.68
Offset:3
Orientation:forward strand
Alignment:TCSACTTTGTTG
---CCTTTGTT-

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:8
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TCSACTTTGTTG-
---CCATTGTTNY

PB0016.1_Foxj1_1/Jaspar

Match Rank:9
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TCSACTTTGTTG-----
-NNNNTTTGTTTACNNT

MA0481.1_FOXP1/Jaspar

Match Rank:10
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:TCSACTTTGTTG-------
----CTTTGTTTACTTTTN