Information for motif12


Reverse Opposite:

p-value:1e-60
log p-value:-1.384e+02
Information Content per bp:1.931
Number of Target Sequences with motif221.0
Percentage of Target Sequences with motif0.17%
Number of Background Sequences with motif7.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets424.4 +/- 392.0bp
Average Position of motif in Background593.8 +/- 367.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0078.1_Sox17/Jaspar

Match Rank:1
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---ATTGTCATCC
CTCATTGTC----

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--ATTGTCATCC
CCATTGTTNY--

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:3
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:ATTGTCATCC
---GTCATN-

MA0084.1_SRY/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:ATTGTCATCC
ATTGTTTAN-

PB0172.1_Sox1_2/Jaspar

Match Rank:5
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----ATTGTCATCC
CTATAATTGTTAGCG

MF0011.1_HMG_class/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:ATTGTCATCC
ATTGTT----

MA0087.1_Sox5/Jaspar

Match Rank:7
Score:0.67
Offset:0
Orientation:forward strand
Alignment:ATTGTCATCC
ATTGTTA---

PB0108.1_Atf1_2/Jaspar

Match Rank:8
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----ATTGTCATCC
NTTATTCGTCATNC

PB0070.1_Sox30_1/Jaspar

Match Rank:9
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------ATTGTCATCC
ANNTCCATTGTTCNNN

PB0165.1_Sox11_2/Jaspar

Match Rank:10
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---ATTGTCATCC-
AAAATTGTTATGAA