Information for motif17


Reverse Opposite:

p-value:1e-55
log p-value:-1.267e+02
Information Content per bp:1.881
Number of Target Sequences with motif177.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets412.5 +/- 385.7bp
Average Position of motif in Background800.1 +/- 533.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0033.1_FOXL1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TACATACGAT
TATACATA----

MA0025.1_NFIL3/Jaspar

Match Rank:2
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TACATACGAT
ANGTTACATAA---

MA0037.2_GATA3/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TACATACGAT
-AGATAAGA-

MA0124.1_NKX3-1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TACATACGAT
ATACTTA----

PB0106.1_Arid5a_2/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TACATACGAT----
CATACAATACGAAATAA

PB0021.1_Gata3_1/Jaspar

Match Rank:6
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------TACATACGAT------
TTTTTAGAGATAAGAAATAAAG

MA0029.1_Mecom/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TACATACGAT----
AAGATAAGATAACA

PB0027.1_Gmeb1_1/Jaspar

Match Rank:8
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----TACATACGAT--
GAGTGTACGTAAGATGG

Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:9
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TACATACGAT--
ATTTGCATACAATGG

MA0032.1_FOXC1/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TACATACGAT
TACTNNNN--