Information for motif20


Reverse Opposite:

p-value:1e-51
log p-value:-1.176e+02
Information Content per bp:1.530
Number of Target Sequences with motif152.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets413.5 +/- 395.6bp
Average Position of motif in Background601.5 +/- 458.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:1
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----TCAAGCAGGC-
GAAGATCAATCACTAA

Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TCAAGCAGGC-----
SCAGYCADGCATGAC

MA0070.1_PBX1/Jaspar

Match Rank:3
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TCAAGCAGGC
CCATCAATCAAA-

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TCAAGCAGGC
-CACGCA---

PB0144.1_Lef1_2/Jaspar

Match Rank:5
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----TCAAGCAGGC-
GAAGATCAATCACTTA

YY1(Zf)/Promoter/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TCAAGCAGGC---
-CAAGATGGCGGC

MA0095.2_YY1/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TCAAGCAGGC---
-CAAGATGGCGGC

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--TCAAGCAGGC
TBGCACGCAA--

MA0461.1_Atoh1/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:forward strand
Alignment:TCAAGCAGGC
--CAGATGGC

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:10
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TCAAGCAGGC
TCATCAATCA---