Information for motif25


Reverse Opposite:

p-value:1e-45
log p-value:-1.048e+02
Information Content per bp:1.530
Number of Target Sequences with motif241.0
Percentage of Target Sequences with motif0.19%
Number of Background Sequences with motif10.1
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets463.2 +/- 406.7bp
Average Position of motif in Background898.9 +/- 505.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0032.1_IRC900814_1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GTGCTTTTTCGT----
GNNATTTGTCGTAANN

PB0148.1_Mtf1_2/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GTGCTTTTTCGT----
--NNTTTTTCTTATNT

FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---GTGCTTTTTCGT-----
NNTGTTCTTTTTTGTTTACT

PB0075.1_Sp100_1/Jaspar

Match Rank:4
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GTGCTTTTTCGT-----
---ATTTTCCGNNAAAT

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GTGCTTTTTCGT---
-TTTTTTTTCNNGTN

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:6
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---GTGCTTTTTCGT
NNTGTGGTTT-----

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:7
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----GTGCTTTTTCGT
TTAAGTGCTT------

MA0060.2_NFYA/Jaspar

Match Rank:8
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GTGCTTTTTCGT---
AGAGTGCTGATTGGTCCA

PB0093.1_Zfp105_1/Jaspar

Match Rank:9
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GTGCTTTTTCGT----
-NTNTTGTTGTTTGTN

PB0146.1_Mafk_2/Jaspar

Match Rank:10
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--GTGCTTTTTCGT-
CCTTGCAATTTTTNN