Information for motif27


Reverse Opposite:

p-value:1e-42
log p-value:-9.710e+01
Information Content per bp:1.530
Number of Target Sequences with motif156.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets459.4 +/- 392.1bp
Average Position of motif in Background463.3 +/- 391.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.60
Offset:4
Orientation:forward strand
Alignment:TAGCCAGGTA-----
----CAGGTAAGTAT

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TAGCCAGGTA--
--NNCAGGTGNN

MA0103.2_ZEB1/Jaspar

Match Rank:3
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:TAGCCAGGTA---
----CAGGTGAGG

PH0104.1_Meis2/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TAGCCAGGTA---
NTATTGACAGGTNNTN

PB0159.1_Rfx4_2/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TAGCCAGGTA-
NNNGTAACTANGNNA

MA0161.1_NFIC/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TAGCCAGGTA
-TGCCAA---

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TAGCCAGGTA-
AAGGCAAGTGT

PH0102.1_Meis1/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TAGCCAGGTA---
NTATTGACAGCTNNTT

PH0105.1_Meis3/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TAGCCAGGTA---
GTATTGACAGGTNNTT

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TAGCCAGGTA
ATGCCAGACN