| p-value: | 1e-40 |
| log p-value: | -9.309e+01 |
| Information Content per bp: | 1.972 |
| Number of Target Sequences with motif | 153.0 |
| Percentage of Target Sequences with motif | 0.12% |
| Number of Background Sequences with motif | 5.1 |
| Percentage of Background Sequences with motif | 0.03% |
| Average Position of motif in Targets | 502.3 +/- 478.4bp |
| Average Position of motif in Background | 651.3 +/- 367.4bp |
| Strand Bias (log2 ratio + to - strand density) | -0.2 |
| Multiplicity (# of sites on avg that occur together) | 1.01 |
| Motif File: | file (matrix)
reverse opposite |
| PDF Format Logos: | forward logo
reverse opposite |
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer
| Match Rank: | 1 |
| Score: | 0.82
| | Offset: | -1
| | Orientation: | reverse strand |
| Alignment: | -TTAATGGCTA
GTTAATGGCC- |
|
|
|
PH0041.1_Hmx1/Jaspar
| Match Rank: | 2 |
| Score: | 0.75
| | Offset: | -5
| | Orientation: | reverse strand |
| Alignment: | -----TTAATGGCTA--
ANNCATTAATTGCTNGN |
|
|
|
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer
| Match Rank: | 3 |
| Score: | 0.72
| | Offset: | -1
| | Orientation: | forward strand |
| Alignment: | -TTAATGGCTA
GKTAATGR--- |
|
|
|
PH0080.1_Hoxd8/Jaspar
| Match Rank: | 4 |
| Score: | 0.72
| | Offset: | -7
| | Orientation: | forward strand |
| Alignment: | -------TTAATGGCTA
TAAATAATTAATGGCTA |
|
|
|
PH0043.1_Hmx3/Jaspar
| Match Rank: | 5 |
| Score: | 0.72
| | Offset: | -5
| | Orientation: | reverse strand |
| Alignment: | -----TTAATGGCTA--
ATTNNTTAATTGCTTGT |
|
|
|
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer
| Match Rank: | 6 |
| Score: | 0.72
| | Offset: | 0
| | Orientation: | forward strand |
| Alignment: | TTAATGGCTA
CTAATKGV-- |
|
|
|
PH0042.1_Hmx2/Jaspar
| Match Rank: | 7 |
| Score: | 0.71
| | Offset: | -5
| | Orientation: | reverse strand |
| Alignment: | -----TTAATGGCTA--
ATTCNTTAATTGCTTGT |
|
|
|
POL004.1_CCAAT-box/Jaspar
| Match Rank: | 8 |
| Score: | 0.70
| | Offset: | 0
| | Orientation: | reverse strand |
| Alignment: | TTAATGGCTA--
TGATTGGCTANN |
|
|
|
PB0135.1_Hoxa3_2/Jaspar
| Match Rank: | 9 |
| Score: | 0.70
| | Offset: | -2
| | Orientation: | reverse strand |
| Alignment: | --TTAATGGCTA--
CCTTAATNGNTTTT |
|
|
|
PH0063.1_Hoxb8/Jaspar
| Match Rank: | 10 |
| Score: | 0.70
| | Offset: | -4
| | Orientation: | reverse strand |
| Alignment: | ----TTAATGGCTA--
TTTATTAATTGCNNGN |
|
|
|
