Information for motif3


Reverse Opposite:

p-value:1e-73
log p-value:-1.689e+02
Information Content per bp:1.957
Number of Target Sequences with motif224.0
Percentage of Target Sequences with motif0.18%
Number of Background Sequences with motif6.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets439.5 +/- 401.2bp
Average Position of motif in Background511.2 +/- 224.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0011.1_HMG_class/Jaspar

Match Rank:1
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:TCCCACAATC
---AACAAT-

MA0087.1_Sox5/Jaspar

Match Rank:2
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TCCCACAATC
--NAACAAT-

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:3
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TCCCACAATC--
ATTTCCCAGVAKSCY

MA0078.1_Sox17/Jaspar

Match Rank:4
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TCCCACAATC--
---GACAATGNN

PB0168.1_Sox14_2/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TCCCACAATC----
CTCACACAATGGCGC

PB0175.1_Sox4_2/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TCCCACAATC-----
TNCNNAACAATTTTTNC

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TCCCACAATC-
-RNAACAATGG

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TCCCACAATC
HTTTCCCASG---

MA0519.1_Stat5a::Stat5b/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TCCCACAATC
ATTTCCAAGAA--

PB0183.1_Sry_2/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TCCCACAATC----
TCACGGAACAATAGGTG