Information for motif30


Reverse Opposite:

p-value:1e-39
log p-value:-9.119e+01
Information Content per bp:1.530
Number of Target Sequences with motif199.0
Percentage of Target Sequences with motif0.16%
Number of Background Sequences with motif8.3
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets413.1 +/- 363.4bp
Average Position of motif in Background595.7 +/- 228.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0143.3_Sox2/Jaspar

Match Rank:1
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TCTACAGAGG
--AACAAAGG

MA0442.1_SOX10/Jaspar

Match Rank:2
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TCTACAGAGG
---ACAAAG-

MA0032.1_FOXC1/Jaspar

Match Rank:3
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TCTACAGAGG
--TACTNNNN

PH0158.1_Rhox11_2/Jaspar

Match Rank:4
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----TCTACAGAGG---
TCNCTTTACAGCGNNNT

PH0157.1_Rhox11_1/Jaspar

Match Rank:5
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----TCTACAGAGG---
TCNNTTTACAGCGNNNT

MA0512.1_Rxra/Jaspar

Match Rank:6
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TCTACAGAGG-----
----CAAAGGTCAGA

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TCTACAGAGG--
--AACAGATGGC

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:TCTACAGAGG
--RACAAWGG

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:TCTACAGAGG
--CACAGN--

MA0154.2_EBF1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TCTACAGAGG
GTCCCCAGGGA