Information for motif34


Reverse Opposite:

p-value:1e-38
log p-value:-8.795e+01
Information Content per bp:1.530
Number of Target Sequences with motif181.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif7.4
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets453.9 +/- 413.3bp
Average Position of motif in Background650.5 +/- 706.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0157.1_Rhox11_1/Jaspar

Match Rank:1
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--GTTTTACAGCGT---
TCNNTTTACAGCGNNNT

PH0158.1_Rhox11_2/Jaspar

Match Rank:2
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--GTTTTACAGCGT---
TCNCTTTACAGCGNNNT

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GTTTTACAGCGT
-TTTAATTGCN-

MA0152.1_NFATC2/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GTTTTACAGCGT
-TTTTCCA----

PH0047.1_Hoxa11/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GTTTTACAGCGT--
NNGTTTTACGACTTTA

TATA-Box(TBP)/Promoter/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GTTTTACAGCGT
CCTTTTATAGNC-

PH0066.1_Hoxc11/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GTTTTACAGCGT--
NNNTTTTACGACNTTN

PH0077.1_Hoxd12/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GTTTTACAGCGT--
NNNATTTTACGACNNTN

PH0169.1_Tgif1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GTTTTACAGCGT---
GATATTGACAGCTGCGT

PH0170.1_Tgif2/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GTTTTACAGCGT---
GTATTGACAGCTNNTT