Information for motif35


Reverse Opposite:

p-value:1e-36
log p-value:-8.392e+01
Information Content per bp:1.530
Number of Target Sequences with motif129.0
Percentage of Target Sequences with motif0.10%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets478.5 +/- 393.6bp
Average Position of motif in Background542.5 +/- 365.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0167.1_Tcf1/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-ATTTAGTTAC------
NTTTTAGTTAACNNAGN

PH0118.1_Nkx6-1_1/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---ATTTAGTTAC----
GAAAATTAATTACTTCG

PH0046.1_Hoxa10/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ATTTAGTTAC---
TNAATTTTATTACCTN

PB0081.1_Tcf1_1/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-ATTTAGTTAC------
NNNTTAGTTAACTNANN

PH0040.1_Hmbox1/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---ATTTAGTTAC----
GAAAACTAGTTAACATC

PH0120.1_Nkx6-3/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---ATTTAGTTAC----
GAAAATTAATTACTTTG

PH0095.1_Lhx5/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---ATTTAGTTAC----
ANNATTTAATTAATTNN

PB0015.1_Foxa2_1/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--ATTTAGTTAC-----
NNNTTTGTTTACTTTTN

PB0159.1_Rfx4_2/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--ATTTAGTTAC---
TACCCTAGTTACCGA

PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:10
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--ATTTAGTTAC---
NNAATTAGTCACGGT