Information for motif36


Reverse Opposite:

p-value:1e-35
log p-value:-8.265e+01
Information Content per bp:1.530
Number of Target Sequences with motif161.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets442.2 +/- 394.0bp
Average Position of motif in Background878.1 +/- 655.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0130.1_ZNF354C/Jaspar

Match Rank:1
Score:0.55
Offset:3
Orientation:forward strand
Alignment:AGACACCACGAT
---ATCCAC---

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.55
Offset:-7
Orientation:forward strand
Alignment:-------AGACACCACGAT
CAAATCCAGACATCACA--

PH0164.1_Six4/Jaspar

Match Rank:3
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----AGACACCACGAT
ATAAATGACACCTATCA

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AGACACCACGAT
CCAGACRSVB----

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--AGACACCACGAT
CCAGACAG------

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AGACACCACGAT-
-NWAACCACADNN

PB0117.1_Eomes_2/Jaspar

Match Rank:7
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----AGACACCACGAT
NNGGCGACACCTCNNN

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AGACACCACGAT
BCAGACWA------

MA0027.1_En1/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AGACACCACGAT
GANCACTACTT-

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AGACACCACGAT
-NAAACCACAG-