Information for motif4


Reverse Opposite:

p-value:1e-68
log p-value:-1.572e+02
Information Content per bp:1.982
Number of Target Sequences with motif197.0
Percentage of Target Sequences with motif0.15%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets550.2 +/- 437.4bp
Average Position of motif in Background798.7 +/- 563.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0472.1_EGR2/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GTGTGTGAGTGT---
GTGCGTGGGCGGGNG

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GTGTGTGAGTGT
-TGCGTGGGYG-

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GTGTGTGAGTGT
NNGCGTGTGTGCNGCN

Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GTGTGTGAGTGT-
-NGCGTGGGCGGR

PB0170.1_Sox17_2/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GTGTGTGAGTGT----
NTTNTATGAATGTGNNC

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GTGTGTGAGTGT--
----TTAAGTGCTT

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:7
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GTGTGTGAGTGT--
---CTTGAGTGGCT

PB0208.1_Zscan4_2/Jaspar

Match Rank:8
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----GTGTGTGAGTGT
NNNNTTGTGTGCTTNN

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GTGTGTGAGTGT--
----TTGAGTGSTT

MA0122.1_Nkx3-2/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GTGTGTGAGTGT-
----TTAAGTGGA