Information for motif40


Reverse Opposite:

p-value:1e-21
log p-value:-4.890e+01
Information Content per bp:1.931
Number of Target Sequences with motif4367.0
Percentage of Target Sequences with motif3.43%
Number of Background Sequences with motif462.1
Percentage of Background Sequences with motif2.97%
Average Position of motif in Targets487.6 +/- 442.6bp
Average Position of motif in Background526.6 +/- 433.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:1
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--ACCTTTGC--
TGACCTTTNCNT

PB0049.1_Nr2f2_1/Jaspar

Match Rank:2
Score:0.74
Offset:-6
Orientation:reverse strand
Alignment:------ACCTTTGC--
NNNNTGACCTTTNNNN

PB0053.1_Rara_1/Jaspar

Match Rank:3
Score:0.73
Offset:-6
Orientation:reverse strand
Alignment:------ACCTTTGC--
NNNGTGACCTTTGNNN

RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--ACCTTTGC----
TGACCTTTGCCCTA

PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--ACCTTTGC----
TGACCTTTGCCCCA

MA0065.2_PPARG::RXRA/Jaspar

Match Rank:6
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--ACCTTTGC-----
TGACCTTTGCCCTAN

MA0017.1_NR2F1/Jaspar

Match Rank:7
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--ACCTTTGC----
TGACCTTTGAACCT

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---ACCTTTGC
CTGACCTTTG-

MA0512.1_Rxra/Jaspar

Match Rank:9
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----ACCTTTGC
NCTGACCTTTG-

PB0161.1_Rxra_2/Jaspar

Match Rank:10
Score:0.69
Offset:-6
Orientation:reverse strand
Alignment:------ACCTTTGC--
NNNNCAACCTTCGNGA