Information for motif41


Reverse Opposite:

p-value:1e-16
log p-value:-3.876e+01
Information Content per bp:1.530
Number of Target Sequences with motif145.0
Percentage of Target Sequences with motif0.11%
Number of Background Sequences with motif8.5
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets674.3 +/- 494.6bp
Average Position of motif in Background990.0 +/- 703.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0179.1_Sp100_2/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CGTCGAGT-----
TCCGTCGCTTAAAAG

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CGTCGAGT---
-CTYRAGTGSY

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CGTCGAGT----
--TTGAGTGSTT

MA0130.1_ZNF354C/Jaspar

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CGTCGAGT
-GTGGAT-

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CGTCGAGT----
-CTTGAGTGGCT

PH0111.1_Nkx2-2/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CGTCGAGT------
NANTTTCAAGTGGTTAN

PH0113.1_Nkx2-4/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CGTCGAGT------
AATTTCAAGTGGCTTN

MA0122.1_Nkx3-2/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CGTCGAGT---
--TTAAGTGGA

PB0147.1_Max_2/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CGTCGAGT-----
NNGTCGCGTGNCAC

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CGTCGAGT
ACGTCA---