Information for motif42


Reverse Opposite:

p-value:1e-16
log p-value:-3.847e+01
Information Content per bp:1.890
Number of Target Sequences with motif6900.0
Percentage of Target Sequences with motif5.42%
Number of Background Sequences with motif764.5
Percentage of Background Sequences with motif4.91%
Average Position of motif in Targets474.1 +/- 447.8bp
Average Position of motif in Background448.3 +/- 414.7bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0133.1_Hic1_2/Jaspar

Match Rank:1
Score:0.85
Offset:-5
Orientation:forward strand
Alignment:-----TGCCCAAG---
GGGTGTGCCCAAAAGG

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TGCCCAAG
HTTTCCCASG

MA0597.1_THAP1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGCCCAAG
CTGCCCGCA

CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TGCCCAAG
ATTGCGCAAC

PB0044.1_Mtf1_1/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TGCCCAAG----
NNTTTGCACACGGCCC

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGCCCAAG-----
NTGCCCANNGGTNA

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGCCCAAG-----
CCGCCCAAGGGCAG

PB0158.1_Rfx3_2/Jaspar

Match Rank:8
Score:0.59
Offset:-8
Orientation:reverse strand
Alignment:--------TGCCCAAG-------
NNTNGNNGTAACCAAGNNNNAGN

MA0072.1_RORA_2/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TGCCCAAG-----
TTGACCTANTTATN

MA0056.1_MZF1_1-4/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGCCCAAG
TCCCCA--