| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File | |
| 1 | | Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer | 1e-4 | -9.569e+00 | 0.0172 | 1015.0 | 0.80% | 110.8 | 0.71% | motif file (matrix) | |
| 2 | | EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer | 1e-3 | -6.993e+00 | 0.1130 | 482.0 | 0.38% | 51.2 | 0.33% | motif file (matrix) | |
| 3 | | X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -5.657e+00 | 0.2863 | 4022.0 | 3.16% | 473.0 | 3.04% | motif file (matrix) |