Information for motif1


Reverse Opposite:

p-value:1e-123
log p-value:-2.833e+02
Information Content per bp:1.898
Number of Target Sequences with motif133.0
Percentage of Target Sequences with motif2.87%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets154.4 +/- 82.6bp
Average Position of motif in Background146.0 +/- 37.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GAGGAGCCGGCG
-CGGAGC-----

MA0162.2_EGR1/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GAGGAGCCGGCG-
GGCGGGGGCGGGGG

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GAGGAGCCGGCG
---CAGCC----

PB0203.1_Zfp691_2/Jaspar

Match Rank:4
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GAGGAGCCGGCG-
NTNNNAGGAGTCTCNTN

PB0117.1_Eomes_2/Jaspar

Match Rank:5
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GAGGAGCCGGCG-
GCGGAGGTGTCGCCTC

MA0516.1_SP2/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GAGGAGCCGGCG-
GGGNGGGGGCGGGGC

PB0010.1_Egr1_1/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---GAGGAGCCGGCG
ANTGCGGGGGCGGN-

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GAGGAGCCGGCG-----
--ATTGCCTCAGGCAAT

POL003.1_GC-box/Jaspar

Match Rank:9
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----GAGGAGCCGGCG
AGGGGGCGGGGCTG---

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GAGGAGCCGGCG
GGGAGGACNG----