Information for motif40


Reverse Opposite:

p-value:1e-27
log p-value:-6.388e+01
Information Content per bp:1.530
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets157.4 +/- 86.4bp
Average Position of motif in Background178.8 +/- 66.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.78
Offset:1
Orientation:forward strand
Alignment:CCCTTTTA-----
-CCTTTTATAGNC

MA0109.1_Hltf/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CCCTTTTA-
AACCTTATAT

POL012.1_TATA-Box/Jaspar

Match Rank:3
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CCCTTTTA---
NNNNNNCTTTTATAN

MA0523.1_TCF7L2/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CCCTTTTA-----
TNCCTTTGATCTTN

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:5
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CCCTTTTA---
TNCCTTTGATGT

MA0108.2_TBP/Jaspar

Match Rank:6
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CCCTTTTA---
NNNNNNCTTTTATAN

PB0040.1_Lef1_1/Jaspar

Match Rank:7
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CCCTTTTA------
AATCCCTTTGATCTATC

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CCCTTTTA-----
---TTTTATTRGN

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CCCTTTTA---
-CCTTTGATGT

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:10
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CCCTTTTA---
-CCTTTGAWGT