Information for motif22


Reverse Opposite:

p-value:1e-54
log p-value:-1.263e+02
Information Content per bp:1.530
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets135.1 +/- 89.5bp
Average Position of motif in Background135.2 +/- 75.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0118.1_Esrra_2/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GCGGGGGTCAGG---
GGCGAGGGGTCAAGGGC

PB0057.1_Rxra_1/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GCGGGGGTCAGG---
NTNNNGGGGTCANGNNN

PB0153.1_Nr2f2_2/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GCGGGGGTCAGG--
CGCGCCGGGTCACGTA

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.64
Offset:4
Orientation:forward strand
Alignment:GCGGGGGTCAGG
----AGGTCA--

PB0030.1_Hnf4a_1/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GCGGGGGTCAGG---
CTCCAGGGGTCAATTGA

PB0157.1_Rara_2/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCGGGGGTCAGG--
AGAGCGGGGTCAAGTA

PB0025.1_Glis2_1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GCGGGGGTCAGG-
NTNTGGGGGGTCNNNA

MA0162.2_EGR1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCGGGGGTCAGG-
GGCGGGGGCGGGGG

MA0512.1_Rxra/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCGGGGGTCAGG
-CAAAGGTCAGA

PB0164.1_Smad3_2/Jaspar

Match Rank:10
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------GCGGGGGTCAGG
NAGANTGGCGGGGNGNA--