Information for motif11


Reverse Opposite:

p-value:1e-70
log p-value:-1.632e+02
Information Content per bp:1.690
Number of Target Sequences with motif80.0
Percentage of Target Sequences with motif1.72%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets139.7 +/- 81.6bp
Average Position of motif in Background140.4 +/- 50.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0161.1_NFIC/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TTGGCCGYCA
TTGGCA----

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TTGGCCGYCA
CCGATTGGCT----

PB0112.1_E2F2_2/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TTGGCCGYCA-----
CCTTCGGCGCCAAAAGG

PB0113.1_E2F3_2/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TTGGCCGYCA-----
AGCTCGGCGCCAAAAGC

YY1(Zf)/Promoter/Homer

Match Rank:5
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TTGGCCGYCA-----
---GCCGCCATCTTG

POL004.1_CCAAT-box/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TTGGCCGYCA
TGATTGGCTANN-

E2F(E2F)/Cell-Cycle-Exp/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCCGYCA-
TTTTCGCGCGAA

ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCCGYCA
CTAGGCCT---

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCCGYCA
CTTGGCAA---

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TTGGCCGYCA----
CTGGCAGNCTGCCA