Information for motif39


Reverse Opposite:

p-value:1e-28
log p-value:-6.623e+01
Information Content per bp:1.530
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets164.2 +/- 86.7bp
Average Position of motif in Background160.8 +/- 21.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer

Match Rank:1
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:GGGAATTT--
GGGAATTTCC

MA0107.1_RELA/Jaspar

Match Rank:2
Score:0.79
Offset:0
Orientation:forward strand
Alignment:GGGAATTT--
GGGAATTTCC

MA0105.3_NFKB1/Jaspar

Match Rank:3
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GGGAATTT---
GGGAATTTCCC

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:4
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--GGGAATTT
CCWGGAATGY

MF0003.1_REL_class/Jaspar

Match Rank:5
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GGGAATTT--
GGGGATTTCC

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--GGGAATTT
NCTGGAATGC

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:7
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GGGAATTT---
NGGGGATTTCCC

MA0101.1_REL/Jaspar

Match Rank:8
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GGGAATTT--
GGGGATTTCC

PB0058.1_Sfpi1_1/Jaspar

Match Rank:9
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----GGGAATTT-
TTAAGAGGAAGTTA

GFY(?)/Promoter/Homer

Match Rank:10
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GGGAATTT----
GGGAATTGTAGT