Information for motif37


Reverse Opposite:

p-value:1e-30
log p-value:-6.988e+01
Information Content per bp:1.530
Number of Target Sequences with motif98.0
Percentage of Target Sequences with motif2.11%
Number of Background Sequences with motif11.7
Percentage of Background Sequences with motif0.53%
Average Position of motif in Targets132.9 +/- 80.8bp
Average Position of motif in Background152.0 +/- 49.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0107.1_Msx2/Jaspar

Match Rank:1
Score:0.78
Offset:-5
Orientation:forward strand
Alignment:-----CCAATTAGAG--
GAAGACCAATTAGCGCT

PH0089.1_Isx/Jaspar

Match Rank:2
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----CCAATTAGAG--
ACTCCTAATTAGTCGT

MA0125.1_Nobox/Jaspar

Match Rank:3
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CCAATTAGAG
ACCAATTA---

PH0033.1_Gbx1/Jaspar

Match Rank:4
Score:0.76
Offset:-5
Orientation:forward strand
Alignment:-----CCAATTAGAG--
TGCCACTAATTAGTGTA

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CCAATTAGAG
BCMATTAG--

MA0132.1_Pdx1/Jaspar

Match Rank:6
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:CCAATTAGAG
--AATTAG--

PH0034.1_Gbx2/Jaspar

Match Rank:7
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----CCAATTAGAG---
AGCGCTAATTAGCGATT

MA0158.1_HOXA5/Jaspar

Match Rank:8
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:CCAATTAGAG
--AATTAGTG

PH0109.1_Nkx1-1/Jaspar

Match Rank:9
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CCAATTAGAG---
TGCGCTAATTAGTGGGA

MA0502.1_NFYB/Jaspar

Match Rank:10
Score:0.72
Offset:-7
Orientation:forward strand
Alignment:-------CCAATTAGAG
AAATGGACCAATCAG--