Information for motif21


Reverse Opposite:

p-value:1e-55
log p-value:-1.278e+02
Information Content per bp:1.530
Number of Target Sequences with motif78.0
Percentage of Target Sequences with motif1.68%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets164.9 +/- 81.5bp
Average Position of motif in Background116.4 +/- 58.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0055.1_Rfx4_1/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCCGTCGCAA----
TACCATAGCAACGGT

PB0054.1_Rfx3_1/Jaspar

Match Rank:2
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----GCCGTCGCAA--------
TGTGACCCTTAGCAACCGATTAA

MA0509.1_Rfx1/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCCGTCGCAA-
GTTGCCATGGCAAC

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GCCGTCGCAA--
TTGCCATGGCAACN

MA0600.1_RFX2/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GCCGTCGCAA------
GTTGCCATGGCAACCGCGG

PB0179.1_Sp100_2/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCCGTCGCAA-----
TCCGTCGCTTAAAAG

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCCGTCGCAA----
CCGCATAGCAACGGA

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCCGTCGCAA--
TTGCCATGGCAACC

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCCGTCGCAA---
-SCCTAGCAACAG

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCCGTCGCAA
NATGTTGCAA