Information for motif23


Reverse Opposite:

p-value:1e-49
log p-value:-1.148e+02
Information Content per bp:1.658
Number of Target Sequences with motif63.0
Percentage of Target Sequences with motif1.36%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets135.4 +/- 84.8bp
Average Position of motif in Background81.1 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0465.1_CDX2/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:ACTTTAAGGC--
-TTTTATGGCTN

PH0065.1_Hoxc10/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--ACTTTAAGGC----
ANNTTTTACGACNTNN

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:ACTTTAAGGC
NTTTTATGAC

MA0505.1_Nr5a2/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-ACTTTAAGGC----
AAGTTCAAGGTCAGC

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:ACTTTAAGGC
ACWTCAAAGG

PH0056.1_Hoxa9/Jaspar

Match Rank:6
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----ACTTTAAGGC---
ANTAATTTTATGGCCGN

PH0077.1_Hoxd12/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---ACTTTAAGGC----
NNNATTTTACGACNNTN

PH0066.1_Hoxc11/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--ACTTTAAGGC----
NNNTTTTACGACNTTN

PH0064.1_Hoxb9/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---ACTTTAAGGC---
NGANTTTTATGGCTCN

PH0013.1_Cdx2/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--ACTTTAAGGC----
NAATTTTATTACCNNN