Information for motif29


Reverse Opposite:

p-value:1e-43
log p-value:-9.997e+01
Information Content per bp:1.530
Number of Target Sequences with motif112.0
Percentage of Target Sequences with motif2.41%
Number of Background Sequences with motif10.3
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets144.5 +/- 85.6bp
Average Position of motif in Background138.3 +/- 163.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---ATTGGCTCGC
CCGATTGGCT---

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--ATTGGCTCGC
TGATTGGCTANN

MA0161.1_NFIC/Jaspar

Match Rank:3
Score:0.67
Offset:1
Orientation:forward strand
Alignment:ATTGGCTCGC
-TTGGCA---

MA0502.1_NFYB/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---ATTGGCTCGC--
CTGATTGGTCNATTT

POL006.1_BREu/Jaspar

Match Rank:5
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:ATTGGCTCGC-
---GGCGCGCT

PH0026.1_Duxbl/Jaspar

Match Rank:6
Score:0.61
Offset:-8
Orientation:reverse strand
Alignment:--------ATTGGCTCGC
NNNNGTTGATTGGGTCG-

PB0009.1_E2F3_1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--ATTGGCTCGC---
ATAAGGGCGCGCGAT

PB0008.1_E2F2_1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ATTGGCTCGC------
-NTCGCGCGCCTTNNN

MA0060.2_NFYA/Jaspar

Match Rank:9
Score:0.60
Offset:-9
Orientation:forward strand
Alignment:---------ATTGGCTCGC
AGAGTGCTGATTGGTCCA-

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:ATTGGCTCGC
---NGCTN--