Information for motif41


Reverse Opposite:

p-value:1e-17
log p-value:-3.981e+01
Information Content per bp:1.530
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif6.4
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets136.6 +/- 80.7bp
Average Position of motif in Background135.0 +/- 54.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

E-box(HLH)/Promoter/Homer

Match Rank:1
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CTCACGTAAC---
-TCACGTGACCGG

HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:2
Score:0.73
Offset:1
Orientation:forward strand
Alignment:CTCACGTAAC-
-GCACGTACCC

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:3
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CTCACGTAAC
BGCACGTA--

PB0007.1_Bhlhb2_1/Jaspar

Match Rank:4
Score:0.72
Offset:-6
Orientation:reverse strand
Alignment:------CTCACGTAAC------
NTNNTNGTCACGTGACNNNTNC

USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CTCACGTAAC-
-TCACGTGACC

MA0025.1_NFIL3/Jaspar

Match Rank:6
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CTCACGTAAC--
-TTATGTAACAT

CRE(bZIP)/Promoter/Homer

Match Rank:7
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CTCACGTAAC
CGGTGACGTCAC

MA0093.2_USF1/Jaspar

Match Rank:8
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTCACGTAAC-
GCCACGTGACC

MA0043.1_HLF/Jaspar

Match Rank:9
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CTCACGTAAC-
NATTACGTAACC

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:10
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTCACGTAAC
TBGCACGCAA-