Information for motif10


Reverse Opposite:

p-value:1e-28
log p-value:-6.629e+01
Information Content per bp:1.704
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets148.9 +/- 83.6bp
Average Position of motif in Background247.7 +/- 40.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.57
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGGACAGTGAGG------
NGAGGTCANNGAGTTCANNN

Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer

Match Rank:2
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AGGACAGTGAGG--
GTAGGTCACTGGGTCA

MA0007.2_AR/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGGACAGTGAGG--
AAGAACAGAATGTTC

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGGACAGTGAGG
AAGGCAAGTGT--

FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AGGACAGTGAGG-
NAGGTCANTGACCT

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AGGACAGTGAGG
CAAAGGTCAG-----

MA0515.1_Sox6/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AGGACAGTGAGG
AAAACAATGG--

MA0160.1_NR4A2/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AGGACAGTGAGG
AAGGTCAC-----

MA0078.1_Sox17/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:AGGACAGTGAGG
--GACAATGNN-

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGGACAGTGAGG
AGGTCA------