Information for motif3


Reverse Opposite:

p-value:1e-39
log p-value:-9.024e+01
Information Content per bp:1.656
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif1.19%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets163.9 +/- 78.7bp
Average Position of motif in Background117.8 +/- 32.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0105.1_Arid3a_2/Jaspar

Match Rank:1
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----TATCATCTAT
ACCCGTATCAAATTT

PB0059.1_Six6_1/Jaspar

Match Rank:2
Score:0.65
Offset:-7
Orientation:forward strand
Alignment:-------TATCATCTAT
AATAGGGTATCATATAT

PH0165.1_Six6_1/Jaspar

Match Rank:3
Score:0.65
Offset:-7
Orientation:forward strand
Alignment:-------TATCATCTAT
AATAGGGTATCAATTAT

PH0166.1_Six6_2/Jaspar

Match Rank:4
Score:0.64
Offset:-7
Orientation:forward strand
Alignment:-------TATCATCTAT
AATAGGGTATCAATATT

PH0161.1_Six1/Jaspar

Match Rank:5
Score:0.64
Offset:-7
Orientation:forward strand
Alignment:-------TATCATCTAT
GATGGGGTATCATTTTT

PH0163.1_Six3/Jaspar

Match Rank:6
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------TATCATCTAT
GATAGGGTATCACTAAT

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TATCATCTAT---
-GYCATCMATCAT

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TATCATCTAT
-GTCATN---

PH0162.1_Six2/Jaspar

Match Rank:9
Score:0.61
Offset:-7
Orientation:forward strand
Alignment:-------TATCATCTAT
AATGGGGTATCACGTTT

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:10
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TATCATCTAT--
--TCATCAATCA