Information for motif28


Reverse Opposite:

p-value:1e-12
log p-value:-2.796e+01
Information Content per bp:1.984
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets149.6 +/- 80.5bp
Average Position of motif in Background172.3 +/- 18.7bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0185.1_Tcf1_2/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-ATAATCTC-----
NNTAATCCNGNCNN

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:ATAATCTC-
-TAATCCCN

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-ATAATCTC
GCTAATCC-

PH0124.1_Obox5_1/Jaspar

Match Rank:4
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----ATAATCTC----
NANANTTAATCCCNNNN

PH0125.1_Obox5_2/Jaspar

Match Rank:5
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----ATAATCTC----
GATAATTAATCCCTCTT

PH0139.1_Pitx3/Jaspar

Match Rank:6
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----ATAATCTC---
GNNAGCTAATCCCCCN

PH0121.1_Obox1/Jaspar

Match Rank:7
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----ATAATCTC-----
NTAGTTAATCCCCTTAN

PH0130.1_Otx2/Jaspar

Match Rank:8
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----ATAATCTC----
GANNATTAATCCCTNNN

PH0123.1_Obox3/Jaspar

Match Rank:9
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----ATAATCTC-----
ATAGTTAATCCCCCNNA

PH0122.1_Obox2/Jaspar

Match Rank:10
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----ATAATCTC-----
ATAGTTAATCCCCCTCA