Information for motif34


Reverse Opposite:

p-value:1e-10
log p-value:-2.397e+01
Information Content per bp:1.530
Number of Target Sequences with motif64.0
Percentage of Target Sequences with motif2.45%
Number of Background Sequences with motif36.6
Percentage of Background Sequences with motif0.97%
Average Position of motif in Targets129.8 +/- 79.9bp
Average Position of motif in Background131.5 +/- 68.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0598.1_EHF/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CCCTTGCT-
-CCTTCCTG

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CCCTTGCT---
CCCCCTGCTGTG

MA0143.3_Sox2/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCCTTGCT
CCTTTGTT

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCCTTGCT------
NCCGTTGCTANGNGN

MA0474.1_Erg/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCCTTGCT--
CCACTTCCTGT

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCCTTGCT-
NCCATTGTTC

PB0137.1_Irf3_2/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CCCTTGCT--
NNGCACCTTTCTCC

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCCTTGCT--
CACTTCCTCT

PB0061.1_Sox11_1/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CCCTTGCT-----
NNNTCCTTTGTTCTNNN

MA0475.1_FLI1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CCCTTGCT--
CCACTTCCTGT