Information for motif6


Reverse Opposite:

p-value:1e-37
log p-value:-8.643e+01
Information Content per bp:1.718
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets145.6 +/- 80.9bp
Average Position of motif in Background135.5 +/- 19.6bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)2.20
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AGCTCACACTGT-
AGCGGCACACACGCAA

MA0258.2_ESR2/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGCTCACACTGT---
AGGTCACCCTGACCT

ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGCTCACACTGT--
NAGGTCACNNTGACC

MA0112.2_ESR1/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----AGCTCACACTGT---
GGCCCAGGTCACCCTGACCT

MA0160.1_NR4A2/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGCTCACACTGT
AAGGTCAC-----

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGCTCACACTGT--
VAGRACAKNCTGTBC

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AGCTCACACTGT---
NAGAACAGNCTGTNCT

MA0007.2_AR/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGCTCACACTGT--
AAGAACAGAATGTTC

MA0113.2_NR3C1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGCTCACACTGT---
AGAACAGAATGTTCT

GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGCTCACACTGT--
VAGRACAKWCTGTYC