Information for motif20


Reverse Opposite:

p-value:1e-17
log p-value:-3.987e+01
Information Content per bp:1.714
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets142.6 +/- 92.8bp
Average Position of motif in Background117.4 +/- 12.4bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)2.33
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0117.1_Mafb/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCTGAGGGTAGA
GCTGACGC----

MA0597.1_THAP1/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GCTGAGGGTAGA
--TNNGGGCAG-

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCTGAGGGTAGA
GCCTCAGGGCAT-

PB0024.1_Gcm1_1/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GCTGAGGGTAGA-
NNNNATGCGGGTNNNN

MA0524.1_TFAP2C/Jaspar

Match Rank:5
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GCTGAGGGTAGA
TGCCCTGGGGCNANN

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCTGAGGGTAGA
SCCTSAGGSCAW-

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GCTGAGGGTAGA
GCTGTGGTTT--

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCTGAGGGTAGA
NGCTN--------

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GCTGAGGGTAGA
TGCTGACTCA---

MA0002.2_RUNX1/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GCTGAGGGTAGA
GTCTGTGGTTT--