Information for motif35


Reverse Opposite:

p-value:1e-10
log p-value:-2.320e+01
Information Content per bp:1.881
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif8.0
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets137.1 +/- 90.9bp
Average Position of motif in Background150.1 +/- 63.8bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.88
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0114.1_Egr1_2/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GAGTGAGGCT--
TGCGGAGTGGGACTGG

POL002.1_INR/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGAGGCT
NNNANTGA----

MA0122.1_Nkx3-2/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAGTGAGGCT
TTAAGTGGA---

PB0144.1_Lef1_2/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GAGTGAGGCT-
NNANTGATTGATNTTN

Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGAGGCT
ATGGGGTGAT---

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GAGTGAGGCT
NTGGGTGTGGCC

MA0595.1_SREBF1/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGAGGCT
GTGGGGTGAT---

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGAGGCT
TTGAGTGSTT--

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:9
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GAGTGAGGCT-
NNANTGATTGATNNNN

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGAGGCT
CTTGAGTGGCT--