Information for motif19


Reverse Opposite:

p-value:1e-17
log p-value:-4.041e+01
Information Content per bp:1.928
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets140.8 +/- 84.4bp
Average Position of motif in Background109.8 +/- 49.1bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.59
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---ATGGTACT------
TTCNAAGTACTTNNNNN

MA0032.1_FOXC1/Jaspar

Match Rank:2
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:ATGGTACT----
----TACTNNNN

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:3
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--ATGGTACT-----
AGATGCTRCTRCCHT

PB0154.1_Osr1_2/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--ATGGTACT------
ACATGCTACCTAATAC

PB0094.1_Zfp128_1/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--ATGGTACT-------
TTNGGGTACGCCNNANN

Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:6
Score:0.57
Offset:-10
Orientation:forward strand
Alignment:----------ATGGTACT--
ACTYKNATTCGTGNTACTTC

MA0124.1_NKX3-1/Jaspar

Match Rank:7
Score:0.56
Offset:3
Orientation:forward strand
Alignment:ATGGTACT--
---ATACTTA

PH0117.1_Nkx3-1/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---ATGGTACT------
TACTAAGTACTTAAATG

PB0155.1_Osr2_2/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--ATGGTACT------
ACTTGCTACCTACACC

PB0072.1_Sox5_1/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----ATGGTACT---
NNTTTATTGTTCTNNN