Information for motif27


Reverse Opposite:

p-value:1e-12
log p-value:-2.927e+01
Information Content per bp:1.704
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets146.6 +/- 76.2bp
Average Position of motif in Background160.3 +/- 69.5bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.94
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGGACATGAGGG
AGGTCA------

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:2
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---AGGACATGAGGG
NACAGGAAAT-----

MA0160.1_NR4A2/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGGACATGAGGG
AAGGTCAC-----

PB0049.1_Nr2f2_1/Jaspar

Match Rank:4
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------AGGACATGAGGG
TCTCAAAGGTCACGAG--

PB0024.1_Gcm1_1/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AGGACATGAGGG-----
-NNNNATGCGGGTNNNN

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AGGACATGAGGG
AAGGATATNTN--

MA0071.1_RORA_1/Jaspar

Match Rank:7
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----AGGACATGAGGG
ATCAAGGTCA------

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---AGGACATGAGGG
TCAAGGTCAN-----

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGGACATGAGGG
ATGCCCTGAGGC

MA0141.2_Esrrb/Jaspar

Match Rank:10
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------AGGACATGAGGG
AGCTCAAGGTCA------