Information for motif2


Reverse Opposite:

p-value:1e-54
log p-value:-1.259e+02
Information Content per bp:1.767
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif1.53%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets162.3 +/- 92.3bp
Average Position of motif in Background205.7 +/- 52.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.24
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TGGTGWGTGTGC----
NNGCGTGTGTGCNGCN

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGGTGWGTGTGC
CAGGTAAGTAT--

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGGTGWGTGTGC
AGGTGTCA----

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TGGTGWGTGTGC
-TGCGTGGGYG-

PB0151.1_Myf6_2/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TGGTGWGTGTGC----
-GGNGCGNCTGTTNNN

Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TGGTGWGTGTGC
GTGGCGTGACNG-

PB0208.1_Zscan4_2/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGGTGWGTGTGC----
NNNNTTGTGTGCTTNN

MA0103.2_ZEB1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGGTGWGTGTGC
CAGGTGAGG----

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TGGTGWGTGTGC-
---TGGGTGTGGC

Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TGGTGWGTGTGC
ATGGGGTGAT---