Information for motif12


Reverse Opposite:

p-value:1e-24
log p-value:-5.714e+01
Information Content per bp:1.747
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets136.4 +/- 73.4bp
Average Position of motif in Background133.9 +/- 39.6bp
Strand Bias (log2 ratio + to - strand density)-1.4
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0032.1_FOXC1/Jaspar

Match Rank:1
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:ACCCTACAGC--
----TACTNNNN

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:ACCCTACAGC
----CACAGN

PH0158.1_Rhox11_2/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ACCCTACAGC-----
TCNCTTTACAGCGNNNT

PB0091.1_Zbtb3_1/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----ACCCTACAGC---
AATCGCACTGCATTCCG

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:ACCCTACAGC
AAACCACAGC

PH0157.1_Rhox11_1/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--ACCCTACAGC-----
TCNNTTTACAGCGNNNT

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-ACCCTACAGC-
NWAACCACADNN

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-ACCCTACAGC
RSCACTYRAG-

MA0511.1_RUNX2/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-ACCCTACAGC----
CAAACCACAAACCCC

MA0002.2_RUNX1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:ACCCTACAGC-
AAACCACAGAN