Information for motif17


Reverse Opposite:

p-value:1e-22
log p-value:-5.122e+01
Information Content per bp:1.495
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets145.8 +/- 85.3bp
Average Position of motif in Background69.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.58
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0058.2_MAX/Jaspar

Match Rank:1
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:SAYCCATGAG---
---CCATGTGCTT

MA0147.2_Myc/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:forward strand
Alignment:SAYCCATGAG---
---CCATGTGCTT

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--SAYCCATGAG---
ATTTCCCAGVAKSCY

MA0154.2_EBF1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:SAYCCATGAG--
-TCCCTGGGGAN

PB0178.1_Sox8_2/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-SAYCCATGAG---
ACATTCATGACACG

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:6
Score:0.56
Offset:4
Orientation:forward strand
Alignment:SAYCCATGAG
----CATGAC

MA0067.1_Pax2/Jaspar

Match Rank:7
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:SAYCCATGAG-
---NCGTGACN

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--SAYCCATGAG
GYCATCMATCAT

NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:SAYCCATGAG--
--KCCACGTGAC

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:SAYCCATGAG---
-TCCCCTGGGGAC