Information for motif1


Reverse Opposite:

p-value:1e-58
log p-value:-1.341e+02
Information Content per bp:1.758
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif1.61%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets130.6 +/- 84.9bp
Average Position of motif in Background160.7 +/- 21.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0138.2_REST/Jaspar

Match Rank:1
Score:0.80
Offset:-6
Orientation:forward strand
Alignment:------ACCAYGGACAGC---
TTCAGCACCATGGACAGCGCC

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.79
Offset:-5
Orientation:reverse strand
Alignment:-----ACCAYGGACAGC---
TCAGCACCATGGACAGCTCC

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.67
Offset:1
Orientation:forward strand
Alignment:ACCAYGGACAGC
-CAAAGGTCAG-

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:ACCAYGGACAGC
-CCAGGAACAG-

MA0592.1_ESRRA/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:ACCAYGGACAGC
-CCAAGGTCACA

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ACCAYGGACAGC
BTCAAGGTCA--

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ACCAYGGACAGC
NTCAAGGTCA--

MA0505.1_Nr5a2/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---ACCAYGGACAGC
AAGTTCAAGGTCAGC

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:ACCAYGGACAGC
------CACAGN

MA0141.2_Esrrb/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--ACCAYGGACAGC
AGCTCAAGGTCA--