| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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| 1 |  | TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-2 | -6.775e+00 | 0.2809 | 43.0 | 15.52% | 35.0 | 9.85% | motif file (matrix) |
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| 2 |  | Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer | 1e-2 | -6.697e+00 | 0.2809 | 5.0 | 1.81% | 1.9 | 0.53% | motif file (matrix) |
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| 3 |  | Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-2 | -6.304e+00 | 0.2809 | 119.0 | 42.96% | 122.3 | 34.43% | motif file (matrix) |
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| 4 |  | TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-2 | -6.120e+00 | 0.2809 | 38.0 | 13.72% | 30.1 | 8.48% | motif file (matrix) |
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| 5 |  | CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-2 | -6.094e+00 | 0.2809 | 36.0 | 13.00% | 28.8 | 8.11% | motif file (matrix) |
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| 6 |  | Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-2 | -6.076e+00 | 0.2809 | 33.0 | 11.91% | 25.6 | 7.21% | motif file (matrix) |
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| 7 |  | NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-2 | -6.011e+00 | 0.2809 | 70.0 | 25.27% | 65.7 | 18.49% | motif file (matrix) |
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| 8 |  | MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer | 1e-2 | -5.327e+00 | 0.2809 | 46.0 | 16.61% | 40.8 | 11.48% | motif file (matrix) |
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| 9 |  | Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer | 1e-2 | -5.057e+00 | 0.2809 | 17.0 | 6.14% | 11.2 | 3.15% | motif file (matrix) |
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| 10 |  | NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-2 | -4.901e+00 | 0.2809 | 20.0 | 7.22% | 14.4 | 4.04% | motif file (matrix) |
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| 11 |  | Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer | 1e-2 | -4.800e+00 | 0.2809 | 4.0 | 1.44% | 1.8 | 0.51% | motif file (matrix) |
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