| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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| 1 |  | Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-5 | -1.288e+01 | 0.0006 | 33.0 | 9.19% | 10.9 | 4.06% | motif file (matrix) |
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| 2 |  | GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-4 | -1.144e+01 | 0.0013 | 9.0 | 2.51% | 1.5 | 0.57% | motif file (matrix) |
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| 3 |  | Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer | 1e-4 | -1.058e+01 | 0.0021 | 53.0 | 14.76% | 22.8 | 8.51% | motif file (matrix) |
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| 4 |  | Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-3 | -7.906e+00 | 0.0227 | 42.0 | 11.70% | 18.8 | 7.01% | motif file (matrix) |
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| 5 |  | PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer | 1e-2 | -6.578e+00 | 0.0684 | 16.0 | 4.46% | 5.8 | 2.17% | motif file (matrix) |
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| 6 |  | Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.304e+00 | 0.0750 | 29.0 | 8.08% | 12.7 | 4.73% | motif file (matrix) |
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| 7 |  | Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-2 | -6.080e+00 | 0.0804 | 39.0 | 10.86% | 18.8 | 7.03% | motif file (matrix) |
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| 8 |  | EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer | 1e-2 | -5.984e+00 | 0.0804 | 6.0 | 1.67% | 0.7 | 0.25% | motif file (matrix) |
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| 9 |  | Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-2 | -5.102e+00 | 0.1664 | 64.0 | 17.83% | 35.3 | 13.17% | motif file (matrix) |
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| 10 |  | GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer | 1e-2 | -5.096e+00 | 0.1664 | 8.0 | 2.23% | 2.9 | 1.07% | motif file (matrix) |
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| 11 |  | IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer | 1e-2 | -5.096e+00 | 0.1664 | 8.0 | 2.23% | 2.0 | 0.75% | motif file (matrix) |
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| 12 |  | ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer | 1e-2 | -5.064e+00 | 0.1664 | 20.0 | 5.57% | 8.4 | 3.14% | motif file (matrix) |
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| 13 |  | Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer | 1e-2 | -4.827e+00 | 0.1664 | 10.0 | 2.79% | 3.9 | 1.45% | motif file (matrix) |
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| 14 |  | TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer | 1e-2 | -4.804e+00 | 0.1664 | 35.0 | 9.75% | 17.0 | 6.36% | motif file (matrix) |
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| 15 |  | LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer | 1e-2 | -4.777e+00 | 0.1664 | 14.0 | 3.90% | 5.2 | 1.94% | motif file (matrix) |
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| 16 |  | NFY(CCAAT)/Promoter/Homer | 1e-2 | -4.770e+00 | 0.1664 | 43.0 | 11.98% | 22.4 | 8.35% | motif file (matrix) |
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