| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File | |
| 1 | | CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer | 1e-16 | -3.723e+01 | 0.0000 | 259.0 | 9.20% | 190.2 | 5.35% | motif file (matrix) | |
| 2 | | BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-7 | -1.796e+01 | 0.0000 | 308.0 | 10.94% | 283.5 | 7.97% | motif file (matrix) | |
| 3 | | LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer | 1e-3 | -7.465e+00 | 0.0469 | 89.0 | 3.16% | 78.3 | 2.20% | motif file (matrix) |